2016-2024年江苏省扬州市临床高毒高耐药肺炎克雷伯菌病原学特征及基因组分析

Etiological and genomic characteristics of clinical hypervirulent and multidrug-resistant Klebsiella pneumoniae isolates in Yangzhou, Jiangsu, 2016−2024

  • 摘要:
    目的 了解2016—2024年江苏省扬州市临床高毒高耐药肺炎克雷伯菌(MDR-hvKP)的耐药、毒力等病原学特征。
    方法 收集2016—2024年江苏省扬州市6家医院临床分离获得的肺炎克雷伯菌,根据微量肉汤稀释法和全基因组测序结果识别MDR-hvKP,并对MDR-hvKP的耐药表型、耐药基因携带情况、毒力因子携带情况、菌株亲缘关系以及携带blaKPC-12的质粒进行分析。
    结果 本研究共收集358株肺炎克雷伯菌,其中分离出59株MDR-hvKP。 药敏试验结果显示,菌株对氯霉素类、磺胺类、头孢菌素类、氨苄西林–舒巴坦、单环内酰胺类、四环素类、喹诺酮类的耐药率>55.00%,对3种碳青霉烯类抗菌药物厄他培南、美罗培南、亚胺培南的耐药率均>40.00%。 检出38种耐药表型,其中18株菌对16种抗菌药物不敏感,共发现9类36种耐药基因。 主要毒力因子iucABCD、iroBCDN、rmpA、rmpA2peg-344的检出率均>50.00%。 ST11为优势序列型(ST),ST700是近2年具有地区特异性的流行型别,同种ST的菌株及不同年份间的菌株均有明显聚集现象。 发现携带少见碳青霉烯类耐药基因blaKPC-12的潜在接合质粒。
    结论 2016—2024年江苏省扬州市MDR-hvKP耐药和毒力情况严重,MDR-hvKP的流行主要由ST11型菌株引起,并且可能通过可移动元件导致MDR-hvKP近年来在该地区的持续存在与传播。

     

    Abstract:
    Objective To understand the resistance, virulence and other etiological characteristics of clinical hypervirulent and multidrug-resistant Klebsiella pneumoniae (MDR-hvKP) isolates in Yangzhou, Jiangsu province, from 2016 to 2024.
    Methods The clinical isolates of K. pneumoniae were collected from six hospitals in Yangzhou during 2016-2024, and MDR-hvKP were identified based on the results of microbroth dilution method and whole-genome sequencing. The resistance phenotype, carriage of resistance genes and virulence factors, affinities of strains, as well as the carriage of blaKPC-12 were analyzed.
    Results A total of 358 K. pneumoniae strains were collected, in which 59 MDR-hvKP strains were isolated. The results of drug susceptibility test showed that the resistance rates to chloramphenicol, sulfonamides, cephalosporins, ampicillin-sulbactam, monocyclic lactams, tetracyclines, and quinolones all exceeded 55.00%, and the resistance rates to all three carbapenem antimicrobials exceeded 40.00%. Thirty-eight resistance phenotypes were detected, of which 18 strains were not sensitive to 16 antibiotics, and 36 resistance determinants in nine categories were identified. The detection rates of major virulence factors iucABCD, iroBCDN, rmpA, rmpA2 and peg-344 were more than 50.00%. ST11 was the predominant sequence type (ST), and ST700 was the predominant in some areas in the past two years, and there were significant clustering of the strains with same ST as well as strains in different years. Potential splice plasmids carrying the rare carbapenem resistance gene blaKPC-12 were found.
    Conclusion The drug resistance and virulence of MDR-hvKP was severe in Yangzhou during 2016−2024. ST11 was the predominant ST, which might result in the persistence and spread of MDR-hvKP in recent years through the mobile element.

     

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