2021-2024年杭州市某区学校中诺如病毒的遗传多样性

Genetic diversity of norovirus in schools of a certain district in Hangzhou, 2021−2024

  • 摘要:
    目的 了解杭州市某区2021-2024年学校感染诺如病毒的分子流行特征。
    方法 收集该区2021年至2024年学校诺如病毒感染病例样本,用反转录聚合酶链式反应(RT-PCR)对诺如病毒进行分型,对阳性样本应用一代或二代测序进行基因组扩增和序列分析。
    结果 2021年至2024年共收集学校胃肠炎感染事件70起共593份标本;通过real-time PCR 方法检测,结果有379份为诺如病毒阳性,成功对其中276份样本进行分型。其中GⅠ型诺如病毒涉及12起疫情,GⅡ型涉及57起,1起为GⅠ/GⅡ型混合感染。基因型分析共检出15个基因型,具有丰富的基因多样性。其中GⅡ.17P17、GⅡ.3P12、GⅡ.7P7 为主要基因型。同源性分析结果显示不同事件的同一基因型的样本之间同源性为89.20%~100.00% ,同一事件中同一基因型的样本间,同源性为92.50~100.00%。
    结论 杭州市某区2021年至2024年学校诺如病毒存在遗传多样性,连续流行株监测显示不同年份有流行型别的转换,可持续开展诺如病毒分子特征监测,为诺如疫情暴发预警提供科学依据。

     

    Abstract:
    Objective  To investigate the molecular epidemioloGⅠcal characteristics of norovirus in school infections in a certain district of Hangzhou from 2021 to 2024.
    Methods  Samples of norovirus infection cases in schools from 2021 to 2024 were collected, and norovirus was genotyped by reverse transcription polymerase chain reaction (RT-PCR) . The positive samples were subjected to first- or second- generation sequencing for genomic amplification and sequence analysis .
    Results  From 2021 to 2024, a total of 593 specimens from 70 gastroenteritis infection events in schools were collected. Among them, 379 norovirus samples were detected as positive and the viral genotypes of 276 specimens were successfully measured. Norovirus type Ⅰ was involved in 12 outbreaks, and type GⅡ was involved in 57 outbreaks (including one of mixed infection of type GⅠ/ type GⅡ), with a total of 15 genotypes discovered . Genotypes GⅡ.17P17, GⅡ.3P12, and GⅡ.7P7 are the main epidemic strains. The homology among samples of the same genotype for different events ranged from 89.2% to 100.0% , the homology among samples of the same genotype in the same event ranged from 92.5% to 100.0%.
    Conclusion  Noroviruses circulating in schools in this district of Hangzhou from 2021 to 2024 exhibited significant genetic diversity, and continuous surveillance revealed a shift in predominant genotypes over different years. Ongoing molecular surveillance of norovirus is essential to provide a scientific basis for early warning of potential outbreaks.

     

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